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1. Young C., Singh M., Jackson K. J.L., Field M.A., Peters T.J., Angioletti-Uberti S., Frenkel D., Ravishankar S., Gupta M., Wang J.J., Agapiou D., Faulks M.L., Al-Eryani G., Luciani F., Gordon T.P., Reed J.H., Danta M., Carr A., Kelleher A.D., Dore G.J., Matthews G., Brink R., Bull R.A., Suan D., Goodnow C.C. (2025) “A triad of somatic mutagenesis converges in self-reactive B cells to cause a virus-induced autoimmune disease” Accepted in Immunity. https://doi.org/10.1101/2024.01.07.574561.   

2. Underwood P.A.*, Gupta M.*, Wu B., Eltahla A.A., Boo I., Wang J.J., Agapiou D., Abayasingam A., Reynaldi A., Keoshkerian E., Zhao Y., Brasher N., Walker M.R., Bukh J., Maher L., Gordon T., Davenport M.P., Luciani F., Drummer H.E., Lloyd A.R., and Bull R.A. (2024) B cell signatures and antibody imprinting define HCV reinfection outcome. J Hep. 81, 415–428. http://dx.doi.org/10.2139/ssrn.4418620.

3. Gupta, M., Balachandran, H., Louie, H.Y.R., Li, H., Agapiou, D., Keoshkerian, E., Christ, D., Rawlinson, W., Mina, M.M., Post, J.J., Hudson, B., Gilroy, N., Konecny, P., Bartlett, A.W., Sasson, S.C., Lloyd, A.R., Martinello, M., Luciani, F., Bull, R.A., and on behalf of the COSIN study group. (2022) High activation levels maintained in RBD-specific memory B cells in people with severe COVID-19. Immunology and Cell Biology.  2023; 101: 142–155. https://doi.org/10.1111/imcb.12607.

4. Balachandran, H., Phetsouphanh, C., Agapiou, D., Adhikari, A., Rodrigo, C., Hammoud, M., Shrestha Bahadur L., Keoshkerian E., Gupta, M., Turville S., Christ D., King C., Sasson S., Bartlett A., Grubor-BaukB., Rawlinson W., Aggarwal A., Stella Ospina A., Klemm V., Mina MM, Post J.J., Hudson B., Gilroy N., Konecny P., Ahlenstiel G., Dwyer D., Sorrell C.T., Kelleher A., Tedla N., Lloyd R.A., Martinello M., Bull A.B., (2022) Maintenance of Broad Neutralising Antibodies and Memory B Cells 12 Months Post-Infection Is Predicted by SARS-CoV-2 Specific CD4+ T Cell Responses. Cell Reports, 38, 110345. doi: 10.1016/j.celrep.2022.110345.

5. Cai C., Samir J., Pirozyan R.M., Adikari N.T., Gupta M., Leung P., Hughes B., Byl der V.W.,  Rizzetto S., Elthala A., Keoshkerian E., Palgen J., Peters T., Nguyen O.H. T., Lou ie R., Kedzierska K., Gaudieri S., Bull A.R., Lloyd R.A., Luciani F. (2022) Single cell multi-omics reveals early elevated function and multiple fates within human progenitor exhausted CD8+ T cells. Nature Communications. 13:7543.

6. Samir, J., Rizzetto, S., Gupta, M., Luciani, F. (2019) Exploring and analysing single cell multi-omics data with VDJView. BMC medical genomics. 13 (1), 1-9.

7. Shradha Khater, Money Gupta, Priyesh Agrawal, Neetu Sain, Jyoti Prava, Priya Gupta, Mansi Grover, Narendra Kumar and Debasisa Mohanty. (2017) SBSPKSv2: structure-based sequence analysis of polyketide synthases and non-ribosomal peptide synthetases. Nucleic Acid Research. Doi: https://doi.org/10.1093/nar/gkx344 (Impact Factor: 10.16).

8. Priyesh Aggarwal, Shradha Khater, Money Gupta, Neetu Sain, Debasisa Mohanty. (2017) RiPPMINER - A bioinformatics tool for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links. Nucleic Acid Research. Doi:10.1093/nar/gkx408. (Impact Factor: 10.16).

9. Money Gupta, Rashi Chauhan, Yamuna Prasad, Gulshan Wadhwa, Chakresh Kumar Jain. (2016) Protein-protein interaction and molecular dynamics analysis for identification of novel inhibitors in Burkholderia cepacia GG4. Computational Biology and Chemistry, vol.65, pp.80-90. (http://dx.doi.org/10.1016/j.compbiolchem.2016.10.003).

10. Money Gupta, Yamuna Prasad, Sanjeev K Sharma, Chakresh K Jain (2016) Identification of Phosphoribosyl-AMP cyclohydrolase, as drug target and its inhibitors in Brucella melitensis bv. 1 16M using metabolic pathway analysis. J Biomol Struct Dynamics, 3:1-31. DOI:10.1080/07391102.2015.1137229. (Impact Factor : 3.123).

11. Chakresh Jain, Money Gupta, Yamuna Prasad, Gulshan Wadhwa, Sanjeev Sharma (2014) Homology modeling and protein engineering of alkane monooxygenase in Burkholderia thailandensis MSMB121: in silico insights. J of Molecular modelling, vol.20, pp.2340. Doi: 10.1007/s00894-014-2340-3. (Impact factor: 1.9).

12. Chakresh Jain, Money Gupta, Yamuna Prasad, Gulshan Wadhwa, Sanjeev Sharma (2014) Homology modeling and molecular dynamics simulations of a protein serine / threonine phosphatase stp1 in Staphylococcus aureus N315: a potential drug target. Molecular Simulation. Doi: 10.1080/08927022.2014.902535.

13. Money Gupta, Gulshan Wadhwa, Sanjeev Kumar Sharma, Chakresh Kumar Jain (2013) Homology modeling and validation of SAS2271 transcriptional regulator of AraC family in Staphylococcus aureus. Asian Pac J Trop Dis. vol. 3(1), pp.1-4.

14. Singh A, Budhraj A, Shrivastava A, Satyavana A, Gupta A, Gupta M, Wadhwa G, Sharma SK, Jain CK (2014) Current Status of Anti-Tuberculosis Therapy: A Patent Analysis. Recent Pat Anti infect Drug Discov. vol.9(1), pp.25-40.